Publications

Citations when using the natverse

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Publications using the natverse

The following 27 publications used the natverse or its direct ancestor (the R AnalysisSuite). If you use a natverse package in one of your papers, then please let us know. You can even add a bibtex formatted record for your publication straight to the top of our bibliography file by following this link. Thanks!


[1] M. Costa, J.D. Manton, A.D. Ostrovsky, S. Prohaska, G.S.X.E. Jefferis, NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases, Neuron. 91 (2016) 293–311. doi:10.1016/j.neuron.2016.06.012.

[2] A.S. Bates, J.D. Manton, S.R. Jagannathan, M. Costa, P. Schlegel, T. Rohlfing, G.S.X.E. Jefferis, The natverse: A versatile computational toolbox to combine and analyse neuroanatomical data, bioRxiv. (2019). doi:10.1101/006353.

[3] G.S.X.E. Jefferis, C.J. Potter, A.M. Chan, E.C. Marin, T. Rohlfing, C.R. Maurer Jr, L. Luo, Comprehensive maps of drosophila higher olfactory centers: Spatially segregated fruit and pheromone representation, Cell. 128 (2007) 1187–203. doi:10.1016/j.cell.2007.01.040.

[4] S. Cachero, A.D. Ostrovsky, J.Y. Yu, B.J. Dickson, G.S.X.E. Jefferis, Sexual dimorphism in the fly brain, Curr Biol. 20 (2010) 1589–601. doi:10.1016/j.cub.2010.07.045.

[5] J.Y. Yu, M.I. Kanai, E. Demir, G.S.X.E. Jefferis, B.J. Dickson, Cellular organization of the neural circuit that drives drosophila courtship behavior, Curr Biol. 20 (2010) 1602–14. doi:10.1016/j.cub.2010.08.025.

[6] A.F. Silbering, R. Rytz, Y. Grosjean, L. Abuin, P. Ramdya, G.S.X.E. Jefferis, R. Benton, Complementary function and integrated wiring of the evolutionarily distinct drosophila olfactory subsystems, J Neurosci. 31 (2011) 13357–75. doi:10.1523/JNEUROSCI.2360-11.2011.

[7] Y. Grosjean, R. Rytz, J.-P. Farine, L. Abuin, J. Cortot, G.S.X.E. Jefferis, R. Benton, An olfactory receptor for food-derived odours promotes male courtship in drosophila, Nature. 478 (2011) 236–40. doi:10.1038/nature10428.

[8] J. Kohl, A.D. Ostrovsky, S. Frechter, G.S.X.E. Jefferis, A bidirectional circuit switch reroutes pheromone signals in male and female brains, Cell. 155 (2013) 1610–23. doi:10.1016/j.cell.2013.11.025.

[9] J.D. Manton, A.D. Ostrovsky, L. Goetz, M. Costa, T. Rohlfing, G.S.X.E. Jefferis, Combining genome-scale Drosophila 3D neuroanatomical data by bridging template brains, bioRxiv. (2014). doi:10.1101/006353.

[10] K. Panser, L. Tirian, F. Schulze, S. Villalba, G.S.X.E. Jefferis, K. Bühler, A.D. Straw, Automatic segmentation of drosophila neural compartments using gal4 expression data reveals novel visual pathways, Curr Biol. 26 (2016) 1943–54. doi:10.1016/j.cub.2016.05.052.

[11] K. Eichler, F. Li, A. Litwin-Kumar, Y. Park, I. Andrade, C.M. Schneider-Mizell, T. Saumweber, A. Huser, C. Eschbach, B. Gerber, R.D. Fetter, J.W. Truman, C.E. Priebe, L.F. Abbott, A.S. Thum, M. Zlatic, A. Cardona, The complete connectome of a learning and memory centre in an insect brain, Nature. 548 (2017) 175–182. doi:10.1038/nature23455.

[12] B. Sutcliffe, J. Ng, T.O. Auer, M. Pasche, R. Benton, G.S.X.E. Jefferis, S. Cachero, Second-generation drosophila chemical tags: Sensitivity, versatility, and speed, Genetics. 205 (2017) 1399–1408. doi:10.1534/genetics.116.199281.

[13] L.L. Prieto-Godino, R. Rytz, S. Cruchet, B. Bargeton, L. Abuin, A.F. Silbering, V. Ruta, M. Dal Peraro, R. Benton, Evolution of acid-sensing olfactory circuits in drosophilids, Neuron. 93 (2017) 661–676.e6. doi:10.1016/j.neuron.2016.12.024.

[14] T. Saumweber, A. Rohwedder, M. Schleyer, K. Eichler, Y.-C. Chen, Y. Aso, A. Cardona, C. Eschbach, O. Kobler, A. Voigt, A. Durairaja, N. Mancini, M. Zlatic, J.W. Truman, A.S. Thum, B. Gerber, Functional architecture of reward learning in mushroom body extrinsic neurons of larval drosophila, Nat Commun. 9 (2018) 1104. doi:10.1038/s41467-018-03130-1.

[15] J.A. Bogovic, H. Otsuna, L. Heinrich, M. Ito, J. Jeter, G. Meissner, A. Nern, J. Colonell, O. Malkesman, K. Ito, S. Saalfeld, An unbiased template of the drosophila brain and ventral nerve cord, bioRxiv. (2018). doi:10.1101/376384.

[16] J. Clemens, C.C. Girardin, P. Coen, X.-J. Guan, B.J. Dickson, M. Murthy, Connecting neural codes with behavior in the auditory system of drosophila, Neuron. 97 (2018) 475. doi:10.1016/j.neuron.2017.12.033.

[17] J.M. Jeanne, M. Fişek, R.I. Wilson, The organization of projections from olfactory glomeruli onto higher-order neurons, Neuron. 98 (2018) 1198–1213.e6. doi:10.1016/j.neuron.2018.05.011.

[18] P. Huoviala, M.-J. Dolan, F. Love, S. Frechter, R.J. Roberts, Z. Mitrevica, P. Schlegel, A.S.S. Bates, Y. Aso, T. Rodrigues, H. Cornwall, M. Stensmyr, D. Bock, G.M. Rubin, M. Costa, G.S. Jefferis, Neural circuit basis of aversive odour processing in drosophila from sensory input to descending output., bioRxiv. (2018). doi:10.1101/394403.

[19] Z. Zheng, J.S. Lauritzen, E. Perlman, C.G. Robinson, M. Nichols, D. Milkie, O. Torrens, J. Price, C.B. Fisher, N. Sharifi, S.A. Calle-Schuler, L. Kmecova, I.J. Ali, B. Karsh, E.T. Trautman, J.A. Bogovic, P. Hanslovsky, G.S.X.E. Jefferis, M. Kazhdan, K. Khairy, S. Saalfeld, R.D. Fetter, D.D. Bock, A complete electron microscopy volume of the brain of adult drosophila melanogaster, Cell. 174 (2018) 730–743.e22. doi:10.1016/j.cell.2018.06.019.

[20] S.G. Chin, S.E. Maguire, P. Huoviala, G.S.X.E. Jefferis, C.J. Potter, Olfactory neurons and brain centers directing oviposition decisions in drosophila, Cell Rep. 24 (2018) 1667–1678. doi:10.1016/j.celrep.2018.07.018.

[21] M.-J. Dolan, G. Belliart-Guérin, A.S. Bates, S. Frechter, A. Lampin-Saint-Amaux, Y. Aso, R.J.V. Roberts, P. Schlegel, A. Wong, A. Hammad, D. Bock, G.M. Rubin, T. Preat, P.-Y. Plaçais, G.S.X.E. Jefferis, Communication from learned to innate olfactory processing centers is required for memory retrieval in drosophila, Neuron. (2018). doi:10.1016/j.neuron.2018.08.037.

[22] Y. Ding, J.L. Lillvis, J. Cande, G.J. Berman, B.J. Arthur, X. Long, M. Xu, B.J. Dickson, D.L. Stern, Neural evolution of context-dependent fly song, Curr Biol. 29 (2019) 1089–1099.e7. doi:10.1016/j.cub.2019.02.019.

[23] P.H. Li, L.F. Lindsey, M. Januszewski, Z. Zheng, A.S. Bates, I. Taisz, M. Tyka, M. Nichols, F. Li, E. Perlman, J. Maitin-Shepard, T. Blakely, L. Leavitt, G.S. Jefferis, D. Bock, V. Jain, Automated reconstruction of a serial-section em drosophila brain with flood-filling networks and local realignment, bioRxiv. (2019). doi:10.1101/605634.

[24] T.O. Auer, M.A. Khallaf, A.F. Silbering, G. Zappia, K. Ellis, B. Hansson, G.S. Jefferis, S. Caron, M. Knaden, R. Benton, The making of an olfactory specialist, bioRxiv. (2019). doi:10.1101/546507.

[25] M.-J. Dolan, S. Frechter, A.S. Bates, C. Dan, P. Huoviala, R.J. Roberts, P. Schlegel, S. Dhawan, R. Tabano, H. Dionne, C. Christoforou, K. Close, B. Sutcliffe, B. Giuliani, F. Li, M. Costa, G. Ihrke, G. Meissner, D. Bock, Y. Aso, G. Rubin, G. Jefferis, Neurogenetic dissection of the drosophila innate olfactory processing center, eLife. 8 (2019) e43079. doi:10.1101/404277.

[26] S. Frechter, A.S. Bates, S. Tootoonian, M.-J. Dolan, J.D. Manton, A. Jamasb, J. Kohl, D. Bock, G.S. Jefferis, Functional and anatomical specificity in a higher olfactory centre, eLife. 8 (2019) e44590. doi:10.7554/eLife.44590.

[27] S. Sayin, J.-F. De Backer, M.E. Wosniack, L. Lewis, K. Siju, L.-M. Frisch, P. Schlegel, A. Edmondson-Stait, N. Sharifi, C. Fisher, S. Calle-Schuler, S. Lauritzen, D. Bock, M. Costa, G.S. Jefferis, J. Gjorgjieva, I. Grunwald Kadow, A neural circuit arbitrates between perseverance and withdrawal in hungry drosophila, Neuron. in press (2019). doi:10.1101/259119.


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