Get information about data on fishatlas.neuro.mpg.de

Get information about data hosted by fishatlas.neuro.mpg.de, including contributing publications, the figures for these publications that show data hosted by the site and the cell types that can be retreived from the site. This information can be used with fishatlas_read_neurons to read specific neurons into R.

fishatlas_figure_clusters(fishatlas_url = "https://fishatlas.neuro.mpg.de",
  study = "Kunst et al", figure = "Figure 3")

fishatlas_figures(fishatlas_url = "https://fishatlas.neuro.mpg.de",
  study = "Kunst et al")

fishatlas_studies(fishatlas_url = "https://fishatlas.neuro.mpg.de")

fishatlas_cell_types(fishatlas_url = "https://fishatlas.neuro.mpg.de",
  study = "Kunst et al")

Arguments

fishatlas_url	the web location of the fish brain atlas project.
study	the study you can to find information on. See all available using fishatlas_studies()
figure	figure you want to find information on. See all available by giving fishatlas_figures() a study.

References

Kunst, Michael, Eva Laurell, Nouwar Mokayes, Anna Kramer, Fumi Kubo, António M. Fernandes, Dominique Förster, Marco Dal Maschio, and Herwig Baier. 2019. “A Cellular-Resolution Atlas of the Larval Zebrafish Brain.” Neuron, May. https://doi.org/10.1016/j.neuron.2019.04.034.

See also

fishatlas_download_neurons, fishatlas_read_brain, fishatlas_read_saved_neurons

Examples

# NOT RUN {
## What studies are available?
fishatlas_studies

## Huh, so what figures do we have in Kunst et al. 2019?
fishatlas_figures(study = "Kunst et al")

## Six figures. What neuron information did the last of them contain?
fishatlas_figure_clusters(study = "Kunst et al", figure = "Figure 6")

## What annotated cell types are there?
fishatlas_cell_types()

# }