Annotate an XYZ location in Clio as a soma or root
Arguments
- pos
XYZ positions in any raw MANC voxel coordinates in any form compatible with
xyzmatrix
- tag
One tag (or as many as there are points) to define the annotation. See details.
- user
One user (or as many users as there are points) to define the annotation. See details.
- description
Either
NULL
, one value or as any as there are points.- ...
Additional arguments passed to
pbapply::pbmapply
and then to the privateclio_fetch
function.
Details
You should use the tags in the following order of preference
- soma
If there is a visible soma, use this tag.
- tosoma
If the soma is not in the dataset, but you know where it is, use this tag.
- root
If you are not sure where the soma is, but you want to specify a position to act as the root e.g. skeletonising the neuron, use this tag.
When annotating multiple points, you can provide either one user/tag or you must provide a user tag for every point.
Examples
if (FALSE) { # \dontrun{
manc_annotate_soma(cbind(31180, 17731, 31252))
} # }