Simple summaries of which regions different neurons innervate

manc_leg_summary summarises I/O in the main leg neuropils.

manc_side_summary summarises connections within all of the ROIs that have an L or R designation.

Usage

manc_leg_summary(ids, long = FALSE, other = FALSE, conn = manc_neuprint())

manc_side_summary(ids, long = FALSE, conn = manc_neuprint())

Arguments

ids: A set of body ids in any form understandable to manc_ids
long: Whether to return results in wide (default) or long format.
other: Whether to return the sum of all other neuropils as an extra column other.
conn: Optional, a neuprint_connection object, which also specifies the neuPrint server. Defaults to manc_neuprint() to ensure that query is against the VNC dataset.

Value

a data.frame with one row per neuron (when long=FALSE) or one row per ROI/IO combination (when long=TRUE). Note that out columns refer to output synapses from the given bodyid onto downstream partners.

Examples

dnals=manc_leg_summary(c(10126, 10118))
#> Error in neuprint_login(server = server, dataset = dataset, token = token,     ...): Sorry you must specify a neuprint server! See ?neuprint_login for details!
dnals
#> Error: object 'dnals' not found
manc_leg_summary(c(10126, 10118), long=TRUE)
#> Error in neuprint_login(server = server, dataset = dataset, token = token,     ...): Sorry you must specify a neuprint server! See ?neuprint_login for details!
heatmap(data.matrix(dnals[grep("_out", colnames(dnals))]),
  Colv = NA, scale = 'none')
#> Error: object 'dnals' not found

# \donttest{
dnls=manc_leg_summary('class:descending')
#> Error in neuprint_login(server = server, dataset = dataset, token = token,     ...): Sorry you must specify a neuprint server! See ?neuprint_login for details!
heatmap(data.matrix(dnls[grep("_out", colnames(dnls))]),
  Colv = NA, scale = 'none')
#> Error: object 'dnls' not found
# }
manc_side_summary('DNp01')
#> Error in neuprint_login(server = server, dataset = dataset, token = token,     ...): Sorry you must specify a neuprint server! See ?neuprint_login for details!