Return point annotations from Clio store

Usage

manc_point_annotations(
  groups = "UK Drosophila Connectomics",
  cache = FALSE,
  bodyid = TRUE,
  node = "clio",
  test = FALSE
)

Arguments

groups: Defines a group for which we would like to see all annotations. When NULL, only returns annotations for your own user.
cache: Whether to cache the result of this call for 5 minutes.
bodyid: Whether or not to compute the current bodyid from the location of the point annotation using manc_xyz2bodyid (defaults to TRUE).
node: A DVID node as returned by manc_dvid_node. The default is to return the current active (unlocked) node being used through neutu.
test: Whether to use the testing clio store database (useful when trying out new code).

Value

A data.frame of annotations

Details

There is an optional 5 minute cache of these lookups (recreated for each new R session). The location of each point annotation will by default be found using the manc_xyz2bodyid function; this will also be cached when cache=TRUE. The default node for these lookups is Clio i.e. you will get the bodyid reported in Clio. You can also choose to lookup the id for any DVID node, by specifying e.g. node='neutu' to get the absolute latest node. Of course in theory bodyids with Clio annotations should not be changing ...

Note that under the hood this uses the malevnc.dataset option to define the set of annotations to query. You should not normally be setting this option yourself, but it does allow the same functions to repurposed for other datasets e.g. CNS.

Examples

if (FALSE) { # \dontrun{
mpa=manc_point_annotations()
head(mpa)
# get absolutely latest bodyids
head(manc_point_annotations(node='neutu'))
} # }