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Low level function to fetch skeleton from brainmaps API

Source: R/brainmaps-api.R
brainmaps_skeleton.Rd

Low level function to fetch skeleton from brainmaps API

Usage

brainmaps_skeleton(x, skeletonuri = getOption("fafbseg.skeletonuri"), ...)

Arguments

x

A single segment id

skeletonuri

The brainmaps URI describing the skeleton source. Defaults to the value of options("fafbseg.skeletonuri").

...

Additional arguments passed to brainmaps_fetch

Value

A list containing the following fields

  • nvertices The number of vertices (n)

  • nedges The number of edges (m)

  • vertices A n x 3 matrix of vertex locations

Details

This API seems to return skeletons in physical (i.e. already calibrated) coordinates.

Examples

if (FALSE) {
brainmaps_skeleton(9208128833)
brainmaps_skeleton(9208128833,
  skeletonuri=paste0("brainmaps://772153499790:fafb_v14:",
  "fafb_v14_16nm_v00c_split3xfill2_flatreseg2_skeletons32",
  "/teasar512_nnconn165_mc10000_prune10_thresh1000_sparse250"))
}