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Set the flytable cell type and other columns for a set of root ids

Source: R/flytable.R
flytable_set_celltype.Rd

Set the flytable cell type and other columns for a set of root ids

Usage

flytable_set_celltype(
  ids,
  cell_type = NULL,
  hemibrain_type = NULL,
  user = "GJ",
  supervoxel_id = NULL,
  DryRun = TRUE,
  table = c("info", "optic"),
  copy_hemibrain_type = FALSE,
  ...
)

Arguments

ids

In any form understood by flywire_ids. If this a data.frame and a supervoxel_id column is also present then that will be used to ensure that any root ids are efficiently mapped to their latest version.

cell_type

Character vector of cell types - can be either of length 1 or of the length of ids.

hemibrain_type

Will also be used to set cell_type if missing and copy_hemibrain_type=TRUE

user

user initials (can be a vector of length ids)

supervoxel_id

Supervoxel ids corresponding to the root ids argument.

DryRun

Default value (T) will return the dataframe that would be used to update

table

The name of a flytable table to update (currently we only support the info (central brain) and optic tables.

copy_hemibrain_type

The recommendation is now *not* to set the cell_type from hemibrain_type if only one is provided, so default is FALSE.

...

Additional columns to update in flytable

Details

By default DryRun=TRUE so that you can see what would happen if you apply your changes. Be careful! Undoing changes is hard, sometimes impossible exactly. If in doubt talk to Greg, Philipp et al before making programmatic updates.

Since flytable always keeps root ids up to date (at least every 30m), the ids argument must be mapped onto the latest ids (using flywire_updateids) before data can be uploaded to flytable. This will be much more efficient if you provide a supervoxel id for each neuron.

See also

flywire_updateids

Examples

if (FALSE) { # \dontrun{
flytable_set_celltype('https://ngl.flywire.ai/?json_url=https://globalv1.flywire-daf.com/nglstate/4668606109450240',
hemibrain_type = 'vLN25', fbbt_id='FBbt_20003784', DryRun = T)
} # }