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Changelog

Source: NEWS.md

nat.h5reg 0.4.3

  • fix h5 registrations on MacOS ARM machines (#10)
  • set up github actions (check, coverage, pkgdown)

nat.h5reg 0.4.2

  • try to provide more information about java errors in saalfeld_xform()

nat.h5reg 0.4.1

  • dr_h5reg() to check java and h5reg installation
  • substantial speed-up in transforming neuronlist objects with xformpoints.h5reg() by memoising the default level check for h5reg objects (17148d5219ff1b1b99ab1dfb4f793eede175cf39).

nat.h5reg 0.4.0

  • Faster transforms by using rJava when available (#6)
  • Don’t warn when using a default registration level (#8)
  • fix saalfeld_xform fails with NA points in inputs (#7)

nat.h5reg 0.3.2

  • add package overview documentation
  • switch to natverse github organisation

nat.h5reg 0.3.1

  • Make hdf5r package an essential dependency (i.e. Import) because we need to look inside h5 files to run the transforms (#5)
  • quote all paths to java command line tool (in case e.g. path to transform file has a space in it) (#4)
  • update to v0.0.1 release of java command line tool. This changes the behaviour of out of range points to affine + nearest non-rigid displacement (see https://github.com/saalfeldlab/transform-helpers/issues/3)
  • depend on R >= 3.5.0 for rds test files

nat.h5reg 0.3.0

  • fix a bug in inverse transforms by upgrading transform helper jar file
  • export is.h5reg() and read.h5reg.info()
  • add some tests and simple test h5 files

nat.h5reg 0.2.0

  • First public version
  • Fully functional transforms using sample h5 format transforms from Stephan Saalfeld.