R/nat-data.R
Cell07PNs.Rd
These R lists (which have additional class neuronlist) contain 40 traced olfactory projection neurons from Jefferis, Potter et al 2007 that have been transformed onto the IS2 template brain (Cachero, Ostrovsky et al 2010).
Jefferis G.S.X.E., Potter C.J., Chan A.M., Marin E.C., Rohlfing T., Maurer C.R.J., and Luo L. (2007). Comprehensive maps of Drosophila higher olfactory centers: spatially segregated fruit and pheromone representation. Cell 128 (6), 1187--1203. doi: 10.1016/j.cell.2007.01.040
Cachero S., Ostrovsky A.D., Yu J.Y., Dickson B.J., and Jefferis G.S.X.E. (2010). Sexual dimorphism in the fly brain. Curr Biol 20 (18), 1589--601. doi: 10.1016/j.cub.2010.07.045
head(Cell07PNs)
#> Brain RegistrationScore Notes Glomerulus Batch Directory Traced
#> EBH11R EBH11R 4 DA1 PN2 unsure yes
#> EBH20L EBH20L 4 DL3 PN2 unsure2 yes
#> EBH20R EBH20R 4 DA1 PN2 unsure2 yes
#> EBI12L EBI12L 4 DA1 PN2 unsure3 yes
#> EBI22R EBI22R 4 DL3 PN2 unsure3 yes
#> EBJ23L EBJ23L 4 DL3 PN2 unsure4 yes
#> Scored.By Sex Include ID HaveWarp HaveAsc
#> EBH11R ACH M EBH11R TRUE TRUE
#> EBH20L ACH EBH20L TRUE TRUE
#> EBH20R ACH M EBH20R TRUE TRUE
#> EBI12L ACH F EBI12L TRUE TRUE
#> EBI22R ACH EBI22R TRUE TRUE
#> EBJ23L ACH EBJ23L TRUE TRUE
#> TraceFile AscBatch Status
#> EBH11R /GD/projects/PN2/TransformedTraces/DA1/EBH11R.tasc New
#> EBH20L /GD/projects/PN2/TransformedTraces/DL3/EBH20L.tasc New
#> EBH20R /GD/projects/PN2/TransformedTraces/DA1/EBH20R.tasc New
#> EBI12L /GD/projects/PN2/TransformedTraces/DA1/EBI12L.tasc New
#> EBI22R /GD/projects/PN2/TransformedTraces/DL3/EBI22R.tasc New
#> EBJ23L /GD/projects/PN2/TransformedTraces/DL3/EBJ23L.tasc New
#> GlomSeq NumNAs MBP1 MBP2 LHBP PNType Seq nTrees StartPoint
#> EBH11R 1 0 34 48 75 iPN 13 1 1
#> EBH20L 1 0 29 29 77 iPN 15 1 1
#> EBH20R 2 0 24 80 147 iPN 16 1 1
#> EBI12L 3 0 29 59 89 iPN 18 1 1
#> EBI22R 2 0 34 34 56 iPN 20 1 1
#> EBJ23L 3 0 23 23 52 iPN 21 1 1
#> CreatedAt
#> EBH11R 2006-01-17 15:21:14
#> EBH20L 2006-01-17 15:21:14
#> EBH20R 2006-01-17 15:21:14
#> EBI12L 2006-01-17 15:21:15
#> EBI22R 2006-01-17 15:21:15
#> EBJ23L 2006-01-17 15:21:15
#> WarpFile
#> EBH11R /GD/projects/PN2/allreg/warp/unsure/average-goodbrains_EBH11R101_warp_m0g40c4e1e-1x16r3.list
#> EBH20L /GD/projects/PN2/allreg/warp/unsure2/average-goodbrains_EBH20L101_warp_m0g40c4e1e-1x16r3.list
#> EBH20R /GD/projects/PN2/allreg/warp/unsure2/average-goodbrains_EBH20R101_warp_m0g40c4e1e-1x16r3.list
#> EBI12L /GD/projects/PN2/allreg/warp/unsure3/average-goodbrains_EBI12L101_warp_m0g40c4e1e-1x16r3.list
#> EBI22R /GD/projects/PN2/allreg/warp/unsure3/average-goodbrains_EBI22R101_warp_m0g40c4e1e-1x16r3.list
#> EBJ23L /GD/projects/PN2/allreg/warp/unsure4/average-goodbrains_EBJ23L101_warp_m0g40c4e1e-1x16r3.list
table(with(Cell07PNs,Glomerulus))
#>
#> DA1 DL3 DP1m VA1d
#> 11 10 8 11