catmaid_get_label_stats returns a data.frame with one row for every node-tag pair.

catmaid_get_all_labels returns a character vector of labels

catmaid_get_label_stats(pid = 1, conn = NULL, ...)

catmaid_get_all_labels(pid = 1, conn = NULL, ...)

Arguments

pid

Project id (default 1)

conn

A catmaid_connection objection returned by catmaid_login. If NULL (the default) a new connection object will be generated using the values of the catmaid.* package options as described in the help for catmaid_login.

...

Additional arguments passed to the catmaid_fetch function

See also

Examples

# \donttest{ label_stats=catmaid_get_label_stats() library(dplyr)
#> #> Attaching package: ‘dplyr’
#> The following object is masked from ‘package:testthat’: #> #> matches
#> The following objects are masked from ‘package:nat’: #> #> intersect, setdiff, union
#> The following objects are masked from ‘package:stats’: #> #> filter, lag
#> The following objects are masked from ‘package:base’: #> #> intersect, setdiff, setequal, union
# select soma labels soma_labels=label_stats %>% filter(labelName=='soma') %>% group_by(skeletonID) # select skeleton ids for neurons with multiple cell bodies multiple_soma=soma_labels %>% count(skeletonID) %>% filter(n>1) %>% arrange(desc(n)) multiple_soma_info = soma_labels %>% filter(skeletonID%in% multiple_soma$skeletonID) # } # \donttest{ head(catmaid_get_all_labels())
#> [1] ">:(" ":)" "!" "!!" "!!!" "?"
# }