Fix FCWBNP.surf by updating to nat.flybrains version (#43)
switch to natverse github organisation
flycircuit 0.6.8
Ensure that flycircuit package can be installed from github with development versions of all its dependencies (fixes to github remotes etc). This was as a result of difficulties installing on the VFB opencpu docker instance.
dev: fixes to travis build configuration (switch to non sudo trusty dist)
flycircuit 0.6.7
Update annotation database (1 August 2016, now 7021 NeuronType annotations)
flycircuit 0.6.6
Add fc_neuron_type
Add online docs with pkgdown
Insist on nat >= 1.8.8
flycircuit 0.6.5
update annotation database (1 April 2015, now 6565 NeuronType annotations)
add fc_glom function to find antennal lobe glomeruli for fc neurons
dev: update to roxygen2 v4.1.1
flycircuit 0.6.4
update annotation database
flycircuit 0.6.3
load_si_data works with bigmat pairs of the form x.desc+x.bin
load_si_data no longer attempts to check for object existence
doc: load_si_data improvements
dev: fix check errors
flycircuit 0.6.2
depend on nat
flycircuit 0.6.1
fix bug when creating data directories (based on rappdirs location) on a new system
flycircuit 0.6
Store persistent data in directory determined by rappdirs package
add load_si_data
add plot3d.APResult
Add apclusterfc
fc_download_data (always) returns path to file
… and can use local file (with warning) if remote url unreadable
… plus additional bug fixes
add as.data.frame.APResult for affinity propagation clustering results
fc_nblast normalises like sub_score_mat
flycircuit 0.5.3
add fc_sex utility function to find sex of animal for any valid flycircuit neuron identifier.
give hclustfc an unsquare argument
flycircuit 0.5.2
fix subtle bug in plot3dfc revealed only when this is used inside a function.
plot3dfc can now accept a character vector for the db argument.
refactored plot3dfc to use nat::plot3d.character. plot3dfc will be deprecated in favour of plot3d.character when that function can coped with multiple identifier styles.
flycircuit 0.4.1
extensive refactoring so that fc_nblast, hclustfc and friends are now thin wrappers on more generic functions in nat.nblast
plot3dfc can handle NA soma positions
update annotation table
docs: plot3dfc improvements
add fcgn_forfile
flycircuit 0.3.1
significant (20x in my tests) speedup for hclustfc using large ff objects containing raw scores.
flycircuit 0.3
ready for use by external code
add subset.hclust, plot3d.hclust
make sure that clustering based on pre-computed nblast scores all works properly and that ff cached versions of the data are available
only provide ff cached versions of raw scores for download and normalise on the fly