malecns_shell.surf is a surface model of the cortex
(rind) of the malecns brain (in nm). It was downloaded from a link provided
by Stuart Berg (of FlyEM).
malecns.surf is a surface model of the malecns neuropil
generated by Philipp Schlegel in May 2022 based on the location of T bars
in the dataset. See
slack
for details.
JRCFIB2022M.surf and malecns.surf are aliases
malecnsvnc_shell.surf is a surface model of the cortex
(rind) of the malecns ventral nerve cord (in nm). It was downloaded from a
link provided by Stuart Berg (of FlyEM) on 2023-11-18.
malecnsvnc.surf is a surface model of the neuropil
of the malecns ventral nerve cord (in nm). It was downloaded from a
link provided by Stuart Berg (of FlyEM) on 2025-05-09.
Format
An object of class hxsurf (inherits from list) of length 4.
An object of class hxsurf (inherits from list) of length 4.
An object of class hxsurf (inherits from list) of length 4.
An object of class hxsurf (inherits from list) of length 4.
An object of class hxsurf (inherits from list) of length 4.
Examples
# \donttest{
library(nat)
boundingbox(malecns_shell.surf)
#> [,1] [,2] [,3]
#> [1,] 16898.1 31849.1 26324.4
#> [2,] 750590.0 441841.0 460357.0
#> attr(,"class")
#> [1] "boundingbox"
# }
if (FALSE) { # \dontrun{
plot3d(malecns_shell.surf, alpha=.2, col='grey')
# in microns
plot3d(malecns_shell.surf/1e3, alpha=.2, col='grey')
# in raw voxels
plot3d(malecns_shell.surf*(8/1e3), alpha=.2, col='grey')
# mesh3d gives more flexibility
plot3d(as.mesh3d(malecns_shell.surf), alpha=.2, col='grey', type='wire', add=T)
} # }
# \donttest{
library(nat)
boundingbox(malecns.surf)
#> [,1] [,2] [,3]
#> [1,] 45319.4 38146.7 79817.4
#> [2,] 726917.9 417784.6 341814.2
#> attr(,"class")
#> [1] "boundingbox"
# }
if (FALSE) { # \dontrun{
plot3d(malecns.surf, alpha=.2, col='grey')
# in microns
plot3d(malecns.surf/1e3, alpha=.2, col='grey')
# in raw voxels
plot3d(malecns.surf*(8/1e3), alpha=.2, col='grey')
# mesh3d gives more flexibility
plot3d(as.mesh3d(malecns.surf), alpha=.2, col='grey', type='wire', add=T)
} # }
# \donttest{
library(nat)
boundingbox(malecnsvnc_shell.surf)
#> [,1] [,2] [,3]
#> [1,] 236909 307526 415488
#> [2,] 551724 574158 1076990
#> attr(,"class")
#> [1] "boundingbox"
# }
if (FALSE) { # \dontrun{
nclear3d()
plot3d(malecns.surf, col='blue')
wire3d(malecns_shell.surf, col='grey')
plot3d(malecnsvnc.surf, col='blue')
wire3d(malecnsvnc_shell.surf, alpha=.2, col='green')
} # }
# \donttest{
library(nat)
boundingbox(malecnsvnc.surf)
#> [,1] [,2] [,3]
#> [1,] 269056 313908 415603
#> [2,] 544697 574052 1076370
#> attr(,"class")
#> [1] "boundingbox"
# }