Package Overview

Provides an overview of key features and data/functions in the package as well.

nat.flybrains-package

Additional flybrain-specific data and tools for use with the NeuroAnatomy Toolbox (nat)

Download more data

How to download additional data beyond those bundled with this package

download_jefferislab_registrations()

Download (or update) and install Jefferis lab registrations

Drosophila Template Brains

Template objects and surface models for a range of Drosophila template brains.

Dmel

Template information and surface model for D. melanogaster reference brain

FCWB

Template information and Surface model of the FCWB FlyCircuit reference brain

FCWBNP.surf

Surface model of the Insect Brain Name Working Group neuropil segmentation in FCWB space

IBN

Template information for the Insect Brain Nomenclature reference brain

IBNWB

Template information for the Insect Brain Nomenclature Whole Brain reference brain

IS2

Template information for the IS2 reference brain

IS2.surf

Surface model of the IS2 reference brain

IS2NP.surf

Surface model of the Insect Brain Name Working Group neuropil segmentation in IS2 coordinate space

JFRC2

Template information and surface model for the JFRC2 reference brain

JFRC2013 JFRC2013DS

Template information and surface model for the JFRC2013 reference brain

JFRC2NP.surf

Surface model of the Insect Brain Name Working Group neuropil segmentation in JFRC2 coordinate space

JRC2018F JRC2018U JRC2018F.surf JRC2018U.surf

Template information and surface models for the JRC2018 reference brains

T1

Template information and surface model for the T1 reference brain

Nerve Cord

Templates and surface meshes for the ventral nerve cord (i.e. Thoracico-Abdominal Ganglion).

VNCIS1

Template information and surface model for the VNCIS1 reference neuropil

JRCVNC2018F JRCVNC2018F.surf

Template information and surface models for JRC2018 VNC templates

Drosophila EM Template Brains

Template objects and surface models for Drosophila electron microscopy volumes

JRCFIB2018F

Template information for the JRCFIB2018F aka hemibrain dataset

Other Drosophilids

Template and brain surface models for Drosophilids other than D. melanogaster.

Dsim

Template information and surface model for D. simulans reference brain

Dvir

Template information and surface model for D. virilis reference brain

DsecI

Template information and surface model for D. sechellia reference brain