R/scoremats.r
sub_score_mat.Rd
Scores can either be returned as raw numbers, normalised such that a self-hit
has score 1, or as the average of the normalised scores in both the forwards
& reverse directions (i.e. |query->target| + |target->query| / 2
).
Distances are returned as either 1 - normscore
in the forwards
direction, or as 1 - normscorebar
, where normscorebar
is
normscore
averaged across both directions.
sub_score_mat( query, target, scoremat = NULL, distance = FALSE, normalisation = c("raw", "normalised", "mean") )
query, target | character vectors of neuron identifiers. |
---|---|
scoremat | a matrix, ff matrix, |
distance | logical indicating whether to return distances or scores. |
normalisation | the type of normalisation procedure that should be
carried out, selected from |