Fetch flytable cell type information to a dataframe with flywire ids — add_celltype_info • fafbseg

add_celltype_info will add information to an existing dataframe.

flytable_meta will fetch a data.frame of metadata from flytable for a given set of identifiers.

Usage

add_celltype_info(
  x,
  idcol = NULL,
  version = NULL,
  suffix = NULL,
  table = c("both", "info", "optic"),
  ...
)

flytable_meta(
  ids = NULL,
  version = NULL,
  table = c("both", "info", "optic"),
  unique = FALSE,
  ...
)

Arguments

x: a data.frame containing root ids or a neuronlist ()
idcol: Optional character vector specifying the column containing ids of the neurons for which cell type information should be provided.
version: Optional numeric CAVE version (see flywire_cave_query). The special signalling value of TRUE uses the current default data dump as returned by flywire_connectome_data_version.
suffix: A character suffix for the new columns (default value of NULL implies no suffix).
table: Which cell type information tables to use (info for brain, optic for optic lobes or both).
...: additional arguments passed to flytable_cell_types
ids: Flywire identifiers/query in any form understood by flywire_ids
unique: Whether to ensure that rows contain only unique identifiers. Default FALSE. When TRUE duplicate rows will be returned with a warning.

Value

a data.frame with extra columns

Details

the root ids must be in a column called one of "pre_id", "post_id", "root_id", "post_pt_root_id", "pre_pt_root_id". If you do not have exactly one of these columns present then you must specify your preferred column with the idcol argument.

See also

flytable_cell_types

Examples

# \donttest{
kcin=flywire_partner_summary("720575940626474889", partners = 'in',
  cleft.threshold = 50)
#> Warning: /home/runner/projects/JanFunke//flywire_synapses.db does not exist
#> Warning: /home/runner/projects/JanFunke//20191211_fafbv14_buhmann2019_li20190805_nt20201223.db does not exist
#> Fetching supervoxel ids for id: 720575940626474889
#> Finding synapses for supervoxels
#> Reading synapse data
#> Fetching root ids
kcin
#> # A tibble: 103 × 3
#>    pre_id             weight     n
#>    <chr>               <int> <int>
#>  1 720575940640891763     29     1
#>  2 720575940613583001     28     1
#>  3 720575940632698797     26     1
#>  4 720575940631269175     25     1
#>  5 720575940607687260     19     1
#>  6 720575940642086389     14     1
#>  7 720575940622673703      8     1
#>  8 720575940620709681      6     1
#>  9 720575940621178206      6     1
#> 10 720575940619665023      5     1
#> # ℹ 93 more rows
kcin2=add_celltype_info(kcin)
kcin2
#> # A tibble: 103 × 13
#>    pre_id          weight     n supervoxel_id side  flow  super_class cell_class
#>    <chr>            <int> <int> <chr>         <chr> <chr> <chr>       <chr>     
#>  1 72057594064089…     29     1 807870292352… right intr… central     ALPN      
#>  2 72057594061358…     28     1 813486739212… right intr… central     MBIN      
#>  3 72057594063269…     26     1 803649542764… right intr… central     ALPN      
#>  4 72057594063126…     25     1 802240106295… right intr… central     ALPN      
#>  5 72057594060768…     19     1 802240792818… right intr… central     ALPN      
#>  6 72057594064208…     14     1 804353917399… right intr… central     ALPN      
#>  7 72057594062267…      8     1 816302178184… right intr… central     Kenyon_Ce…
#>  8 72057594062070…      6     1 813494986893… right intr… central     NA        
#>  9 72057594062117…      6     1 812080052867… right intr… central     Kenyon_Ce…
#> 10 72057594061966…      5     1 814192490249… right intr… central     Kenyon_Ce…
#> # ℹ 93 more rows
#> # ℹ 5 more variables: cell_type <chr>, top_nt <chr>, ito_lee_hemilineage <chr>,
#> #   hemibrain_type <chr>, fbbt_id <chr>
library(dplyr)
#> 
#> Attaching package: ‘dplyr’
#> The following objects are masked from ‘package:nat’:
#> 
#>     intersect, setdiff, union
#> The following objects are masked from ‘package:stats’:
#> 
#>     filter, lag
#> The following objects are masked from ‘package:base’:
#> 
#>     intersect, setdiff, setequal, union
kcin2 %>%
  group_by(cell_type) %>%
  summarise(wt = sum(weight),n=n()) %>%
  arrange(desc(wt))
#> # A tibble: 20 × 3
#>    cell_type    wt     n
#>    <chr>     <int> <int>
#>  1 KCab        144    78
#>  2 VA1d_adPN    29     1
#>  3 APL          28     1
#>  4 DM2_lPN      26     2
#>  5 VM6_adPN     26     1
#>  6 VM2_adPN     19     1
#>  7 VA4_lPN      14     1
#>  8 LHPV12a1      9     2
#>  9 PAM11         4     2
#> 10 DPM           3     1
#> 11 PAM10         3     2
#> 12 PPL202        3     1
#> 13 PAM04         2     2
#> 14 PPL105        2     2
#> 15 KCapbp-m      1     1
#> 16 MBON02        1     1
#> 17 MBON06        1     1
#> 18 MBON07        1     1
#> 19 PPL106        1     1
#> 20 NA            1     1
kcin2 %>%
  count(cell_class, wt = weight)
#> # A tibble: 6 × 2
#>   cell_class      n
#>   <chr>       <int>
#> 1 ALPN          114
#> 2 DAN            15
#> 3 Kenyon_Cell   145
#> 4 MBIN           31
#> 5 MBON            3
#> 6 NA             10
# }

if (FALSE) {
# read neuronlist containing "dotprops" for some olfactory projection neurons
da2=read_l2dps('DA2')
# add cell type details to that
da2=add_celltype_info(da2)
}
# \donttest{
flytable_meta("class:MBON")
#>               root_id     supervoxel_id  side      flow super_class cell_class
#> 1  720575940624185095 79448854932107696  left intrinsic     central       MBON
#> 2  720575940623472716 80011942324010318 right intrinsic     central       MBON
#> 3  720575940638526278 80715286101144676 right intrinsic     central       MBON
#> 4  720575940629585602 81137979670302132 right intrinsic     central       MBON
#> 5  720575940637934308 81349085835581377 right intrinsic     central       MBON
#> 6  720575940632118343 78744342923662254  left intrinsic     central       MBON
#> 7  720575940609959637 78603948898007978  left intrinsic     central       MBON
#> 8  720575940638163428 78111986298788517  left intrinsic     central       MBON
#> 9  720575940630496374 81349223341739625 right intrinsic     central       MBON
#> 10 720575940642142861 78393323903110735  left intrinsic     central       MBON
#> 11 720575940611344078 80223254782485510 right intrinsic     central       MBON
#> 12 720575940634822751 81277549061520124 right intrinsic     central       MBON
#> 13 720575940617552340 79588561627810154 right intrinsic     central       MBON
#> 14 720575940624280328 81489685951698728 right intrinsic     central       MBON
#> 15 720575940617567206 78180912067538056  left intrinsic     central       MBON
#> 16 720575940643700640 80152611093049624 right intrinsic     central       MBON
#> 17 720575940615221811 81137979670297348 right intrinsic     central       MBON
#> 18 720575940614026193 80154466519131949 right intrinsic     central       MBON
#> 19 720575940633209647 78463486488950059  left intrinsic     central       MBON
#> 20 720575940623001480 80154535238527400 right intrinsic     central       MBON
#> 21 720575940613070485 81066305390179956 right intrinsic     central       MBON
#> 22 720575940614595218 78040449457502610  left intrinsic     central       MBON
#> 23 720575940636992368 80785654845309410 right intrinsic     central       MBON
#> 24 720575940621828443 79166830266640003  left intrinsic     central       MBON
#> 25 720575940637902938 78181599128215629  left intrinsic     central       MBON
#> 26 720575940638774606 78040449457461921  left intrinsic     central       MBON
#> 27 720575940639697827 80224766543977933 right intrinsic     central       MBON
#> 28 720575940626833021 78251349531485275  left intrinsic     central       MBON
#> 29 720575940618008859 77901086224032815  left intrinsic     central       MBON
#> 30 720575940635841143 78110818201436707  left intrinsic     central       MBON
#> 31 720575940618249797 80082723452177136 right intrinsic     central       MBON
#> 32 720575940629856515 77408917331762608  left intrinsic     central       MBON
#> 33 720575940623905719 80224972702135904 right intrinsic     central       MBON
#> 34 720575940629529722 78533992672102680  left intrinsic     central       MBON
#> 35 720575940624659943 80011255129536552  left intrinsic     central       MBON
#> 36 720575940624590316 79167173863853528 right intrinsic     central       MBON
#> 37 720575940645304430 79380479052758063  left intrinsic     central       MBON
#> 38 720575940612196850 81136880426746412 right intrinsic     central       MBON
#> 39 720575940630767959 78251486970442209  left intrinsic     central       MBON
#> 40 720575940640963747 76985537105536911  left intrinsic     central       MBON
#> 41 720575940628757547 78040449457463315  left intrinsic     central       MBON
#> 42 720575940627144069 79166692827138268 right intrinsic     central       MBON
#> 43 720575940610647416 81137979602919932 right intrinsic     central       MBON
#> 44 720575940622093436 81136880426744139 right intrinsic     central       MBON
#> 45 720575940624696810 78110818201651448  left intrinsic     central       MBON
#> 46 720575940629422086 77760348668670642  left intrinsic     central       MBON
#> 47 720575940647328900 81137979670303492 right intrinsic     central       MBON
#> 48 720575940650386553 78110818201681795  left intrinsic     central       MBON
#> 49 720575940639556467 81067610926141558 right intrinsic     central       MBON
#> 50 720575940636120986 81700242831237167 right intrinsic     central       MBON
#> 51 720575940617749538 80786135881765925 right intrinsic     central       MBON
#> 52 720575940617760257 81277549061455173 right intrinsic     central       MBON
#> 53 720575940619810389 79518055445188833 right intrinsic     central       MBON
#> 54 720575940634482783 81136605414678093 right intrinsic     central       MBON
#> 55 720575940644615716 78182286188838645  left intrinsic     central       MBON
#> 56 720575940626109315 81066305390093306 right intrinsic     central       MBON
#> 57 720575940623377802 78110818201621392  left intrinsic     central       MBON
#> 58 720575940626744921 81277549061481189 right intrinsic     central       MBON
#> 59 720575940623464316 81136880426764424 right intrinsic     central       MBON
#> 60 720575940622979277 79027192356412856  left intrinsic     central       MBON
#> 61 720575940614892182 81277617781167541 right intrinsic     central       MBON
#> 62 720575940615756690 78111917579300796  left intrinsic     central       MBON
#> 63 720575940613090673 78324741798855874  left intrinsic     central       MBON
#> 64 720575940621777391 81137979736901319 right intrinsic     central       MBON
#> 65 720575940606953858 81136880426735755 right intrinsic     central       MBON
#> 66 720575940630075703 79309972869657633  left intrinsic     central       MBON
#> 67 720575940652390134 78603949099622269  left intrinsic     central       MBON
#> 68 720575940632535756 79380204241413766  left intrinsic     central       MBON
#> 69 720575940643696288 79309904216692475  left intrinsic     central       MBON
#> 70 720575940620162718 78323023677138555  left intrinsic     central       MBON
#> 71 720575940635063135 80082242348953693 right intrinsic     central       MBON
#> 72 720575940616463477 77830305364995511  left intrinsic     central       MBON
#> 73 720575940629981440 78885355625276424  left intrinsic     central       MBON
#> 74 720575940623182847 78463211409646517  left intrinsic     central       MBON
#> 75 720575940626315010 79943222847625326 right intrinsic     central       MBON
#> 76 720575940632943277 80925980016963911 right intrinsic     central       MBON
#> 77 720575940624539284 78040449457553649  left intrinsic     central       MBON
#> 78 720575940626180878 80011530007496199  left intrinsic     central       MBON
#> 79 720575940628783363 80434292093847745 right intrinsic     central       MBON
#> 80 720575940643309197 79870998677653042  left intrinsic     central       MBON
#> 81 720575940614392999 79237542540872430  left intrinsic     central       MBON
#> 82 720575940617302365 78604086538417636  left intrinsic     central       MBON
#> 83 720575940635651680 81277549061591572 right intrinsic     central       MBON
#> 84 720575940624694503 79941230049538531  left intrinsic     central       MBON
#> 85 720575940628734376 79869899232522382 right intrinsic     central       MBON
#> 86 720575940610964946 81630904409213619 right intrinsic     central       MBON
#> 87 720575940607155890 80433124332533007 right intrinsic     central       MBON
#> 88 720575940623381956 80644779918075196 right intrinsic     central       MBON
#> 89 720575940628487813 81560466945525625 right intrinsic     central       MBON
#> 90 720575940638028607 81419592152467685 right intrinsic     central       MBON
#> 91 720575940621164720 80222636373797362  left intrinsic     central       MBON
#> 92 720575940623841463 78251349531447591  left intrinsic     central       MBON
#> 93 720575940631177803 78814711734490195  left intrinsic     central       MBON
#> 94 720575940622306625 79166761480079751 right intrinsic     central       MBON
#> 95 720575940616398303 79729161744437991  left intrinsic     central       MBON
#> 96 720575940623750325 79729161744426207  left intrinsic     central       MBON
#>        cell_type        top_nt ito_lee_hemilineage hemibrain_type       fbbt_id
#> 1         MBON02     glutamate    putative_primary         MBON02 FBbt_00111012
#> 2         MBON01     glutamate    putative_primary         MBON01 FBbt_00100234
#> 3         MBON32          gaba    putative_primary         MBON32 FBbt_00049852
#> 4         MBON10          gaba                EBa1         MBON10 FBbt_00111008
#> 5         MBON30     glutamate    putative_primary         MBON30 FBbt_00049850
#> 6         MBON10          gaba                EBa1         MBON10 FBbt_00111008
#> 7         MBON32          gaba    putative_primary         MBON32 FBbt_00049852
#> 8         MBON06     glutamate    putative_primary         MBON06 FBbt_00100242
#> 9         MBON05     glutamate    putative_primary         MBON05 FBbt_00111004
#> 10        MBON10     glutamate                EBa1         MBON10 FBbt_00111008
#> 11        MBON20          gaba    putative_primary         MBON20 FBbt_00111013
#> 12   MBON17-like acetylcholine          DL1_dorsal    MBON17-like          <NA>
#> 13        MBON02          gaba    putative_primary         MBON02 FBbt_00111012
#> 14        MBON33 acetylcholine    putative_primary         MBON33 FBbt_00049853
#> 15        MBON23 acetylcholine          DL1_dorsal         MBON23 FBbt_00049113
#> 16        MBON29 acetylcholine         DL2_ventral         MBON29 FBbt_00049849
#> 17        MBON10          gaba                EBa1         MBON10 FBbt_00111008
#> 18        MBON14 acetylcholine               FLAa2         MBON14 FBbt_00100238
#> 19        MBON10     glutamate                EBa1         MBON10 FBbt_00111008
#> 20        MBON12 acetylcholine               FLAa2         MBON12 FBbt_00111009
#> 21   MBON15-like acetylcholine          DL1_dorsal    MBON15-like          <NA>
#> 22        MBON28 acetylcholine          DL1_dorsal         MBON28 FBbt_00049848
#> 23        MBON31          gaba    putative_primary         MBON31 FBbt_00049851
#> 24        MBON12 acetylcholine               FLAa2         MBON12 FBbt_00111009
#> 25        MBON35 acetylcholine    putative_primary         MBON35 FBbt_00049855
#> 26        MBON17 acetylcholine          DL1_dorsal         MBON17 FBbt_00111064
#> 27        MBON14 acetylcholine               FLAa2         MBON14 FBbt_00100238
#> 28        MBON19 acetylcholine          DL1_dorsal         MBON19 FBbt_00111011
#> 29        MBON30     glutamate    putative_primary         MBON30 FBbt_00049850
#> 30        MBON15 acetylcholine          DL1_dorsal         MBON15 FBbt_00111010
#> 31        MBON27 acetylcholine    putative_primary         MBON27 FBbt_00049847
#> 32        MBON09          gaba    putative_primary         MBON09 FBbt_00111007
#> 33        MBON12 acetylcholine               FLAa2         MBON12 FBbt_00111009
#> 34        MBON10     glutamate                EBa1         MBON10 FBbt_00111008
#> 35 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 36        MBON03     glutamate    putative_primary         MBON03 FBbt_00100232
#> 37        MBON13 acetylcholine               FLAa2         MBON13 FBbt_00100239
#> 38   MBON15-like acetylcholine          DL1_dorsal    MBON15-like          <NA>
#> 39        MBON15 acetylcholine          DL1_dorsal         MBON15 FBbt_00111010
#> 40   MBON15-like acetylcholine          DL1_dorsal    MBON15-like          <NA>
#> 41   MBON15-like acetylcholine          DL1_dorsal    MBON15-like          <NA>
#> 42 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 43        MBON10          gaba                EBa1         MBON10 FBbt_00111008
#> 44        MBON15 acetylcholine          DL1_dorsal         MBON15 FBbt_00111010
#> 45   MBON15-like acetylcholine          DL1_dorsal    MBON15-like          <NA>
#> 46        MBON09          gaba    putative_primary         MBON09 FBbt_00111007
#> 47        MBON10          gaba                EBa1         MBON10 FBbt_00111008
#> 48   MBON17-like acetylcholine          DL1_dorsal    MBON17-like          <NA>
#> 49        MBON10          gaba                EBa1         MBON10 FBbt_00111008
#> 50        MBON15 acetylcholine          DL1_dorsal         MBON15 FBbt_00111010
#> 51        MBON11          gaba    putative_primary         MBON11 FBbt_00100246
#> 52        MBON17 acetylcholine          DL1_dorsal         MBON17 FBbt_00111064
#> 53 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 54        MBON19 acetylcholine          DL1_dorsal         MBON19 FBbt_00111011
#> 55        MBON31          gaba    putative_primary         MBON31 FBbt_00049851
#> 56        MBON19 acetylcholine          DL1_dorsal         MBON19 FBbt_00111011
#> 57        MBON16 acetylcholine          DL1_dorsal         MBON16 FBbt_00111063
#> 58        MBON16 acetylcholine          DL1_dorsal         MBON16 FBbt_00111063
#> 59        MBON24 acetylcholine    putative_primary         MBON24 FBbt_00049844
#> 60        MBON27 acetylcholine    putative_primary         MBON27 FBbt_00049847
#> 61        MBON28 acetylcholine          DL1_dorsal         MBON28 FBbt_00049848
#> 62        MBON21 acetylcholine    putative_primary         MBON21 FBbt_00111046
#> 63        MBON20          gaba    putative_primary         MBON20 FBbt_00111013
#> 64        MBON21 acetylcholine    putative_primary         MBON21 FBbt_00111046
#> 65        MBON23 acetylcholine          DL1_dorsal         MBON23 FBbt_00049113
#> 66        MBON12 acetylcholine               FLAa2         MBON12 FBbt_00111009
#> 67        MBON07     glutamate    putative_primary         MBON07 FBbt_00111005
#> 68        MBON14 acetylcholine               FLAa2         MBON14 FBbt_00100238
#> 69        MBON14 acetylcholine               FLAa2         MBON14 FBbt_00100238
#> 70        MBON11          gaba    putative_primary         MBON11 FBbt_00100246
#> 71        MBON22 acetylcholine    putative_primary         MBON22 FBbt_00100240
#> 72        MBON22 acetylcholine    putative_primary         MBON22 FBbt_00100240
#> 73        MBON26 acetylcholine    putative_primary         MBON26 FBbt_00049846
#> 74        MBON33 acetylcholine    putative_primary         MBON33 FBbt_00049853
#> 75        MBON13 acetylcholine               FLAa2         MBON13 FBbt_00100239
#> 76        MBON35 acetylcholine    putative_primary         MBON35 FBbt_00049855
#> 77        MBON18 acetylcholine          DL1_dorsal         MBON18 FBbt_00110101
#> 78        MBON04     glutamate    putative_primary         MBON04 FBbt_00111014
#> 79        MBON07     glutamate    putative_primary         MBON07 FBbt_00111005
#> 80        MBON01     glutamate    putative_primary         MBON01 FBbt_00100234
#> 81        MBON29 acetylcholine         DL2_ventral         MBON29 FBbt_00049849
#> 82        MBON07     glutamate    putative_primary         MBON07 FBbt_00111005
#> 83        MBON18 acetylcholine          DL1_dorsal         MBON18 FBbt_00110101
#> 84        MBON03     glutamate    putative_primary         MBON03 FBbt_00100232
#> 85        MBON04     glutamate    putative_primary         MBON04 FBbt_00111014
#> 86        MBON09          gaba    putative_primary         MBON09 FBbt_00111007
#> 87        MBON26 acetylcholine    putative_primary         MBON26 FBbt_00049846
#> 88        MBON07     glutamate    putative_primary         MBON07 FBbt_00111005
#> 89        MBON09          gaba    putative_primary         MBON09 FBbt_00111007
#> 90        MBON06     glutamate    putative_primary         MBON06 FBbt_00100242
#> 91        MBON05 acetylcholine    putative_primary         MBON05 FBbt_00111004
#> 92        MBON19 acetylcholine          DL1_dorsal         MBON19 FBbt_00111011
#> 93        MBON24 acetylcholine    putative_primary         MBON24 FBbt_00049844
#> 94 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 95 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 96 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
flytable_meta("type:MBON2%")
#>               root_id     supervoxel_id  side      flow super_class cell_class
#> 1  720575940611344078 80223254782485510 right intrinsic     central       MBON
#> 2  720575940617567206 78180912067538056  left intrinsic     central       MBON
#> 3  720575940643700640 80152611093049624 right intrinsic     central       MBON
#> 4  720575940614595218 78040449457502610  left intrinsic     central       MBON
#> 5  720575940618249797 80082723452177136 right intrinsic     central       MBON
#> 6  720575940624659943 80011255129536552  left intrinsic     central       MBON
#> 7  720575940627144069 79166692827138268 right intrinsic     central       MBON
#> 8  720575940619810389 79518055445188833 right intrinsic     central       MBON
#> 9  720575940623464316 81136880426764424 right intrinsic     central       MBON
#> 10 720575940622979277 79027192356412856  left intrinsic     central       MBON
#> 11 720575940614892182 81277617781167541 right intrinsic     central       MBON
#> 12 720575940615756690 78111917579300796  left intrinsic     central       MBON
#> 13 720575940613090673 78324741798855874  left intrinsic     central       MBON
#> 14 720575940621777391 81137979736901319 right intrinsic     central       MBON
#> 15 720575940606953858 81136880426735755 right intrinsic     central       MBON
#> 16 720575940635063135 80082242348953693 right intrinsic     central       MBON
#> 17 720575940616463477 77830305364995511  left intrinsic     central       MBON
#> 18 720575940629981440 78885355625276424  left intrinsic     central       MBON
#> 19 720575940614392999 79237542540872430  left intrinsic     central       MBON
#> 20 720575940607155890 80433124332533007 right intrinsic     central       MBON
#> 21 720575940631177803 78814711734490195  left intrinsic     central       MBON
#> 22 720575940622306625 79166761480079751 right intrinsic     central       MBON
#> 23 720575940616398303 79729161744437991  left intrinsic     central       MBON
#> 24 720575940623750325 79729161744426207  left intrinsic     central       MBON
#>        cell_type        top_nt ito_lee_hemilineage hemibrain_type       fbbt_id
#> 1         MBON20          gaba    putative_primary         MBON20 FBbt_00111013
#> 2         MBON23 acetylcholine          DL1_dorsal         MBON23 FBbt_00049113
#> 3         MBON29 acetylcholine         DL2_ventral         MBON29 FBbt_00049849
#> 4         MBON28 acetylcholine          DL1_dorsal         MBON28 FBbt_00049848
#> 5         MBON27 acetylcholine    putative_primary         MBON27 FBbt_00049847
#> 6  MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 7  MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 8  MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 9         MBON24 acetylcholine    putative_primary         MBON24 FBbt_00049844
#> 10        MBON27 acetylcholine    putative_primary         MBON27 FBbt_00049847
#> 11        MBON28 acetylcholine          DL1_dorsal         MBON28 FBbt_00049848
#> 12        MBON21 acetylcholine    putative_primary         MBON21 FBbt_00111046
#> 13        MBON20          gaba    putative_primary         MBON20 FBbt_00111013
#> 14        MBON21 acetylcholine    putative_primary         MBON21 FBbt_00111046
#> 15        MBON23 acetylcholine          DL1_dorsal         MBON23 FBbt_00049113
#> 16        MBON22 acetylcholine    putative_primary         MBON22 FBbt_00100240
#> 17        MBON22 acetylcholine    putative_primary         MBON22 FBbt_00100240
#> 18        MBON26 acetylcholine    putative_primary         MBON26 FBbt_00049846
#> 19        MBON29 acetylcholine         DL2_ventral         MBON29 FBbt_00049849
#> 20        MBON26 acetylcholine    putative_primary         MBON26 FBbt_00049846
#> 21        MBON24 acetylcholine    putative_primary         MBON24 FBbt_00049844
#> 22 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 23 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 24 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
# the / introduces a regex query (small performance penalty, more flexible)
flytable_meta("/type:MBON2[0-5]")
#>               root_id     supervoxel_id  side      flow super_class cell_class
#> 1  720575940611344078 80223254782485510 right intrinsic     central       MBON
#> 2  720575940617567206 78180912067538056  left intrinsic     central       MBON
#> 3  720575940624659943 80011255129536552  left intrinsic     central       MBON
#> 4  720575940627144069 79166692827138268 right intrinsic     central       MBON
#> 5  720575940619810389 79518055445188833 right intrinsic     central       MBON
#> 6  720575940623464316 81136880426764424 right intrinsic     central       MBON
#> 7  720575940615756690 78111917579300796  left intrinsic     central       MBON
#> 8  720575940613090673 78324741798855874  left intrinsic     central       MBON
#> 9  720575940621777391 81137979736901319 right intrinsic     central       MBON
#> 10 720575940606953858 81136880426735755 right intrinsic     central       MBON
#> 11 720575940635063135 80082242348953693 right intrinsic     central       MBON
#> 12 720575940616463477 77830305364995511  left intrinsic     central       MBON
#> 13 720575940631177803 78814711734490195  left intrinsic     central       MBON
#> 14 720575940622306625 79166761480079751 right intrinsic     central       MBON
#> 15 720575940616398303 79729161744437991  left intrinsic     central       MBON
#> 16 720575940623750325 79729161744426207  left intrinsic     central       MBON
#>        cell_type        top_nt ito_lee_hemilineage hemibrain_type       fbbt_id
#> 1         MBON20          gaba    putative_primary         MBON20 FBbt_00111013
#> 2         MBON23 acetylcholine          DL1_dorsal         MBON23 FBbt_00049113
#> 3  MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 4  MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 5  MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 6         MBON24 acetylcholine    putative_primary         MBON24 FBbt_00049844
#> 7         MBON21 acetylcholine    putative_primary         MBON21 FBbt_00111046
#> 8         MBON20          gaba    putative_primary         MBON20 FBbt_00111013
#> 9         MBON21 acetylcholine    putative_primary         MBON21 FBbt_00111046
#> 10        MBON23 acetylcholine          DL1_dorsal         MBON23 FBbt_00049113
#> 11        MBON22 acetylcholine    putative_primary         MBON22 FBbt_00100240
#> 12        MBON22 acetylcholine    putative_primary         MBON22 FBbt_00100240
#> 13        MBON24 acetylcholine    putative_primary         MBON24 FBbt_00049844
#> 14 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 15 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
#> 16 MBON25,MBON34     glutamate              SMPad3  MBON25,MBON34          <NA>
# }