R/name.R
neuprint_get_meta.RdGet key metadata for body (including name, type, status, size)
neuprint_get_meta(
bodyids,
dataset = NULL,
all_segments = TRUE,
conn = NULL,
chunk = TRUE,
progress = FALSE,
possibleFields = NULL,
...
)the body IDs for neurons/segments (bodies) you wish to query.
This can be in any form understood by neuprint_ids.
optional, a dataset you want to query. If NULL, the
default specified by your R environ file is used or, failing that the
current connection, is used. See neuprint_login for details.
if TRUE, all bodies are considered, if FALSE, only 'Neurons', i.e. bodies with a status roughly traced status.
optional, a neuprintr connection object, which also specifies the
neuPrint server. If NULL, the defaults set in your
.Rprofile or .Renviron are
used. See neuprint_login for details.
A logical specifying whether to split the query into multiple
chunks or an integer specifying the size of those chunks (which defaults to
2000 when chunk=TRUE).
default FALSE. If TRUE, the API is called separately for each
neuron and you can assess its progress, if an error is thrown by any one
bodyid, that bodyid is ignored.
passed to neuprint_get_fields when not
NULL, otherwise a default set are used.
methods passed to neuprint_login
a data.frame containing the neuron's
name
type Cell type of the neuron
status (Traced etc)
statusLabel similar to status but often a bit more specific
size size in voxels
pre number of presynapses
post number of postsynapses
cropped whether the neuron is cropped by the hemibrain volume
soma whether the neuron has a soma in the hemibrain volume
cellBodyFiber names the tract connecting the soma to rest of neuron
Sometimes a cellBodyFiber will be present even when the
soma is not, so this may be a good test of if the neuron is present
in the volume. The cellBodyFiber should be matched to (hemi)lineage
information .
# \donttest{
da2s=neuprint_search(".*DA2.*")
neuprint_get_meta(da2s$bodyid)
#> bodyid pre post upstream downstream status statusLabel voxels
#> 1 1796817841 396 509 509 3275 Traced Roughly traced 726508881
#> 2 1796818119 511 818 818 4111 Traced Roughly traced 917547898
#> 3 1797505019 345 476 476 2932 Traced Roughly traced 450568345
#> 4 1827516355 391 548 548 3263 Traced Roughly traced 741928779
#> 5 818983130 409 562 562 3400 Traced Roughly traced 612641685
#> 6 1669017843 89 106 106 490 Traced Leaves 83607944
#> 7 1669699714 89 95 95 482 Traced Leaves 78128261
#> 8 1669946117 102 118 118 521 Traced Leaves 99214765
#> 9 1670382036 78 102 102 412 Traced Leaves 71552951
#> 10 1670386270 93 94 94 463 Traced Leaves 82834198
#> 11 1670390647 91 127 127 485 Traced Leaves 71396028
#> 12 1669358817 86 107 107 443 Traced Leaves 76911124
#> 13 1671659809 18 17 17 66 Traced Leaves 7008274
#> 14 1702107389 70 86 86 324 Traced Leaves 71342150
#> 15 1702802179 103 110 110 522 Traced Leaves 76354600
#> 16 1701675592 124 156 156 646 Traced Leaves 102503828
#> 17 1701757711 88 86 86 433 Traced Leaves 85122273
#> 18 1700393451 93 137 137 492 Traced Leaves 74038623
#> 19 1732792926 86 114 114 518 Traced Leaves 90045017
#> 20 1732797061 85 87 87 450 Traced Leaves 78823995
#> 21 1733491818 97 109 109 499 Traced Leaves 85400235
#> 22 1733833296 109 141 141 606 Traced Leaves 90844980
#> 23 1796809680 67 69 69 317 Traced Leaves 31604606
#> 24 1796813992 57 63 63 296 Traced Leaves 26856261
#> 25 1796818061 83 95 95 451 Traced Leaves 67833130
#> 26 1796818191 48 69 69 234 Traced Leaves 23328521
#> 27 1796822470 96 98 98 496 Traced Leaves 80017616
#> 28 1826929327 101 126 126 553 Traced Leaves 89671264
#> 29 1858887650 43 54 54 210 Traced Leaves 19559580
#> 30 1858892359 51 58 58 229 Traced Leaves 26021432
#> 31 1859220826 41 35 35 205 Traced Leaves 26734869
#> 32 1859224592 59 67 67 244 Traced Leaves 31014767
#> 33 1859224739 50 44 44 233 Traced Leaves 18505661
#> 34 1859565686 38 36 36 181 Traced Leaves 16301601
#> 35 1889931525 50 50 50 237 Traced Leaves 19397298
#> 36 5901198995 90 108 108 514 Traced Leaves 74962468
#> 37 5901201379 21 2 2 112 Traced Leaves 11362150
#> 38 5901202409 104 128 128 506 Traced Leaves 80877299
#> 39 5813040847 81 77 77 415 Traced Leaves 66608639
#> 40 5812994702 86 102 102 447 Traced Leaves 90239045
#> cropped name type cellBodyFiber notes soma
#> 1 FALSE DA2_lPN_R DA2_lPN AVM02 <NA> TRUE
#> 2 FALSE DA2_lPN_R DA2_lPN AVM02 <NA> TRUE
#> 3 FALSE DA2_lPN_R DA2_lPN AVM02 <NA> FALSE
#> 4 FALSE DA2_lPN_R DA2_lPN AVM02 <NA> TRUE
#> 5 FALSE DA2_lPN_R DA2_lPN AVM02 <NA> FALSE
#> 6 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 7 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 8 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 9 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 10 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 11 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 12 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 13 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 14 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 15 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 16 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 17 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 18 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 19 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 20 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 21 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 22 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 23 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 24 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 25 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 26 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 27 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 28 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 29 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 30 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 31 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 32 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 33 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 34 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 35 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 36 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 37 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 38 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 39 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 40 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
# or simpler
neuprint_get_meta('DA2')
#> bodyid pre post upstream downstream status statusLabel voxels
#> 1 1796817841 396 509 509 3275 Traced Roughly traced 726508881
#> 2 1796818119 511 818 818 4111 Traced Roughly traced 917547898
#> 3 1797505019 345 476 476 2932 Traced Roughly traced 450568345
#> 4 1827516355 391 548 548 3263 Traced Roughly traced 741928779
#> 5 818983130 409 562 562 3400 Traced Roughly traced 612641685
#> 6 1669017843 89 106 106 490 Traced Leaves 83607944
#> 7 1669699714 89 95 95 482 Traced Leaves 78128261
#> 8 1669946117 102 118 118 521 Traced Leaves 99214765
#> 9 1670382036 78 102 102 412 Traced Leaves 71552951
#> 10 1670386270 93 94 94 463 Traced Leaves 82834198
#> 11 1670390647 91 127 127 485 Traced Leaves 71396028
#> 12 1669358817 86 107 107 443 Traced Leaves 76911124
#> 13 1671659809 18 17 17 66 Traced Leaves 7008274
#> 14 1702107389 70 86 86 324 Traced Leaves 71342150
#> 15 1702802179 103 110 110 522 Traced Leaves 76354600
#> 16 1701675592 124 156 156 646 Traced Leaves 102503828
#> 17 1701757711 88 86 86 433 Traced Leaves 85122273
#> 18 1700393451 93 137 137 492 Traced Leaves 74038623
#> 19 1732792926 86 114 114 518 Traced Leaves 90045017
#> 20 1732797061 85 87 87 450 Traced Leaves 78823995
#> 21 1733491818 97 109 109 499 Traced Leaves 85400235
#> 22 1733833296 109 141 141 606 Traced Leaves 90844980
#> 23 1796809680 67 69 69 317 Traced Leaves 31604606
#> 24 1796813992 57 63 63 296 Traced Leaves 26856261
#> 25 1796818061 83 95 95 451 Traced Leaves 67833130
#> 26 1796818191 48 69 69 234 Traced Leaves 23328521
#> 27 1796822470 96 98 98 496 Traced Leaves 80017616
#> 28 1826929327 101 126 126 553 Traced Leaves 89671264
#> 29 1858887650 43 54 54 210 Traced Leaves 19559580
#> 30 1858892359 51 58 58 229 Traced Leaves 26021432
#> 31 1859220826 41 35 35 205 Traced Leaves 26734869
#> 32 1859224592 59 67 67 244 Traced Leaves 31014767
#> 33 1859224739 50 44 44 233 Traced Leaves 18505661
#> 34 1859565686 38 36 36 181 Traced Leaves 16301601
#> 35 1889931525 50 50 50 237 Traced Leaves 19397298
#> 36 5901198995 90 108 108 514 Traced Leaves 74962468
#> 37 5901201379 21 2 2 112 Traced Leaves 11362150
#> 38 5901202409 104 128 128 506 Traced Leaves 80877299
#> 39 5813040847 81 77 77 415 Traced Leaves 66608639
#> 40 5812994702 86 102 102 447 Traced Leaves 90239045
#> cropped name type cellBodyFiber notes soma
#> 1 FALSE DA2_lPN_R DA2_lPN AVM02 <NA> TRUE
#> 2 FALSE DA2_lPN_R DA2_lPN AVM02 <NA> TRUE
#> 3 FALSE DA2_lPN_R DA2_lPN AVM02 <NA> FALSE
#> 4 FALSE DA2_lPN_R DA2_lPN AVM02 <NA> TRUE
#> 5 FALSE DA2_lPN_R DA2_lPN AVM02 <NA> FALSE
#> 6 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 7 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 8 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 9 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 10 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 11 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 12 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 13 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 14 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 15 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 16 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 17 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 18 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 19 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 20 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 21 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 22 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 23 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 24 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 25 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 26 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 27 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 28 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 29 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 30 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 31 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 32 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 33 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 34 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 35 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 36 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 37 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 38 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 39 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
#> 40 TRUE ORN_DA2 ORN_DA2 <NA> <NA> FALSE
# }
if (FALSE) { # \dontrun{
neuprint_get_meta('cropped:false')
} # }