neuprintr: R Client Utilities for Interacting with the neuPrint Connectome Analysis Service

Access to the neuprint connectome analysis service, including functions to fetch skeletons, synapses and ROIs, query connectivity data and develop new low level queries.

Login

See neuprint_login or the package README for details of the how to login to a neuPrint server, the recommended initial setup and (optionally) how to specify a default dataset.

Online Documentation

See https://natverse.github.io/neuprintr/ for structured online documentation.

Package Options

• neuprintr.support_hidden_rois In some instances rois are not defined in a dataset's ROI list but only in field names. However, in these circumstances, these ROI fields will not be listed in the neuprint field properties for the dataset and a slower approach must be used to list fields. To avoid paying a speed penalty for what is a rare circumstance even with private in progress datasets, this option is provided. Set it to TRUE to support such hidden fields if you need them.

See also

Useful links:

• https://natverse.org/neuprintr

• https://github.com/natverse/neuprintr

• Report bugs at https://github.com/natverse/neuprintr/issues

Author

Maintainer: Alexander Bates alexander.shakeel.bates@gmail.com (ORCID)

Authors:

• Gregory Jefferis jefferis@gmail.com (ORCID)

• Romain Franconville (ORCID)

Examples

# List all package options
if (FALSE) { # \dontrun{
options()[grepl("^neuprintr", names(options()))]
} # }