Identifiers and Annotations
There are at least 3 different kinds of identifiers in use with the flycircuit database. These functions convert between them as well as making additional metadata available. Furthermore annotations carried out in the course of the Costa et al. NBLAST study are also available - these include the identification of 5400 neuronal types as well as the glomeruli innervated by 433 olfactory projection neurons.
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annotation
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A dataframe containing manual annotations of some FlyCircuit neurons |
fc_glom()
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Antennal lobe glomerulus (where applicable) for FlyCircuit identifiers |
fc_neuron_type() fc_annotated_class()
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Return metadata including NeuronType for FlyCircuit neurons |
fc_sex()
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return sex of the animal for one or more FlyCircuit identifiers |
fcidtable
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fcidtable - Data.frame of flycircuit identifiers |
fc_gene_name() fc_idid() fc_neuron()
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Convert between different FlyCircuit identifiers |
fcgn_forfile()
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Return the flycircuit gene_name identifier for a file |
fc_get_ids()
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Scrape FlyCircuit.tw for neuron IDs |
Plotting and surfaces
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FCWB.surf
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FCWB.surf - Surface model of FCWB FlyCircuit reference brain |
FCWBNP.surf
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FCWBNP.surf - Surface model of FlyLight neuropil segmentation in FlyCircuit
coordinate space |
fcwbnpsurf()
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Plot 3D surfaces of the FlyLight neuropil segmentation in FlyCircuit coordinate space |
fcwbsurf()
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Plot a 3D surface of the FlyCircuit reference brain |
getRegionsFromSurf()
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Return a list of regions contained in a surface |
getRegionSurf()
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Creates a new surface containing specified regions from a given surface |
plot3d(<APResult>)
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Plot exemplar neurons/all cluster members after clustering by affinity
propagation |
plot3dfc()
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Plot FlyCircuit neurons using rgl |
pop3dfc()
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Remove plotted FlyCircuit neurons (deprecated, see nat::npop3d) |
selectRegionsFromSurf()
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Select regions from a surface |
dpscan()
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Scan through a set of flycircuit neurons |
drawRegionSurf()
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Draw surface corresponding to a given list of regions from surface object |