This function gets information stored on NeuronBridge for *D. melanogaster* neurons and genetic driver lines that have been used in EM-LM searches.
neuronbridge_info(
id,
dataset = c("detect", "by_line", "by_body"),
version = "v2_1_1",
...
)character vector. An identifier/identifiers for the neuron(s)/line(s) you wish to search. This can either be a line code for a GAL4 line (e.g. R16F12) or a split GAL4 line (e.g. LH173) or a 'body ID' for a neuron from the hemibrain connectome, (e.g. 1537331894).
whether the ID given is a body ID ("by_body") from the hemibrain connectome
or a genetic driver line ("by_line"). If left at "detect" then neuronbridger tries to guess to which id belongs by using
neuronbridger:::guess_dataset.
the precomputed scores to search. For example, "v2_1_1" refers to this release.
methods passed to neuronbridger:::neuronbridge_fetch.
a data.frame where each row corresponds to a MIP file that has been used to compute matching scores.
Each relates to the id you gave in the function call, but each also has its own unique nb.id.
- the id you gave in the function call.
- the data set from which this data item came.
- the path on https://s3.amazonaws.com/, at which one can find a 'high res' .png of the MIP file for this data item.
- the path on https://s3.amazonaws.com/, at which one can find a 'low res' .jpg thumbnail of the MIP file for this data item.
- the sex of the fly brain which this data item derives
- the 'NeuronBridge ID' for the MIP file.
- the total number of MIP files (each with its own nb.id) that related to the id for which you searched.
if (FALSE) { # \dontrun{
# Get information on a mushroombody related GMR GAL4 driver line
nb.info.lm = neuronbridge_info("MB543B")
# Get information on the hemibrain neuron,
nb.info.em = neuronbridge_info("542634818")
} # }