Manually assign the dendrite and axon to a neuron

3D interactive functions to edit neurons in an rgl viewer, including re-assigned cable as being axon, dendrite, primary neurite, etc., choosing soma locations and pruning bits of cable as a user chooses.

manually_assign_labels(x, brain = NULL, is.cropped = FALSE, ...)

# S3 method for neuron
manually_assign_labels(x, brain = NULL, is.cropped = FALSE, ...)

# S3 method for neuronlist
manually_assign_labels(x, brain = NULL, is.cropped = FALSE, ...)

hemibrain_prune_online(x, brain = NULL, Label = NULL, lock = NULL, ...)

# S3 method for neuron
hemibrain_prune_online(x, brain = NULL, Label = NULL, lock = NULL, ...)

# S3 method for neuronlist
hemibrain_prune_online(x, brain = NULL, Label = NULL, lock = NULL, ...)

hemibrain_correctsoma(x, ...)

Arguments

x	a neuron/neuronlist object
brain	which brain to plot while splitting neuron.
is.cropped	logical. If TRUE, the user is asked whether the neuron being considered is complete or not.
...	additional arguments passed to plotting functions, namely plot3d_split
Label	the type of cable to be assigned/edited. Use standardise_labels to see how numbers convert to cable types.
lock	a vector of number representing cable types to lock (so that they cannot be edited interactively be a user). If NULL (default) no cable type is treated as locked. Locked cable will appear in green.

Value

The neuron/neuronlist object with axon/dendrite info assigned in SWC format to neuron$d

Examples

# \donttest{
# Choose some neurons
exemplars = c("202916528", "1279775082",  "203253072",
             "326530038",  "203253253", "5813079341")

neurons = neuprintr::neuprint_read_neurons(exemplars)

neurons.flow = hemibrain_flow_centrality(neurons)

if (FALSE) {
# Plot the split to check it, correcting any errors
nat::nopen3d()
neurons.manual = manually_assign_labels(neurons.flow)
}# }