Plot neurons split up by flow centrality
plot3d_split( someneuronlist, prepost = c("BOTH", "PRE", "POST"), col = c("#1BB6AF", "#EF7C12", "#C70E7B", "#8FDA04", "#4D4D4D", "#FC6882"), splitnode = FALSE, WithConnectors = TRUE, WithNodes = F, soma = NULL, soma.alpha = 1, transmitters = FALSE, transmitter.alpha = 0.3, highflow = FALSE, lwd = 1, radius = NULL, already_selected = NULL, check.template = FALSE, ... ) nlscan_split( someneuronlist, already_selected = NULL, prepost = c("BOTH", "PRE", "POST"), col = c("#1BB6AF", "#EF7C12", "#C70E7B", "#8FDA04", "#4D4D4D", "#FC6882"), splitnode = FALSE, WithConnectors = TRUE, WithNodes = F, soma = NULL, soma.alpha = 1, transmitters = FALSE, transmitter.alpha = 0.3, highflow = FALSE, lwd = 1, radius = NULL, check.template = FALSE, Verbose = TRUE, Wait = TRUE, sleep = 0.1, selected_file = NULL, selected_col = "#fadadd", yaml = TRUE, brain = FALSE, ... ) plot3d_somas( someneuronlist, col = hemibrain_bright_colors["green"], radius = 300, soma.alpha = 1, volume = NULL, invert = FALSE )
a neuronlist or neuron object that has been modified by flow.centrality.
whether to plot input (POST-) or output (PRE-) synapses, or both (default).
colours of sections. Defaults to orange or axons, green for primary dendrite, blue for dendrites and pink for nodes with no flow.
if TRUE, a magenta sphere is placed at the location of the axon-dendrite split. Possible a putative action potential initiation site?
whether to plot the anatomical location of pre (red) and post (cyan) synapses.
whether to plot branch points.
whether to plot a soma, and what the radius should be. If
numeric, alpha transparency value for plotting the soma. Passed to
numeric, alpha transparency value for a coloured halo indicative of transmitter identity around synapses. Passed to
whether to plot the nodes of highest (with in one standard deviation less than maximum) flow centrality (pink points).
Line width (default 1).
For connectors and axon-dendrite split node (default 1). If
a vector of IDs for neurons that are already considered selected. If
check which template space
additional arguments passed to methods.
logical indicating that info about each selected neuron should be printed (default TRUE)
logical indicating that there should be a pause between each displayed neuron
time to pause between each displayed neuron when Wait=TRUE
an optional path to a yaml file that already contains a selection
the color in which selected neurons (such as those specified in selected_file) should be plotted
a logical indicating that selections should be saved to disk in (human-readable) yaml rather than (machine-readable) rda format
a template brain to plot.
Plots coloured neuron(s)