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Use FlyWire v2 (Princeton) synapses as an extra dataset with coconatfly

Source: R/flywire2.R
register_flywire2.Rd

Register the v2 connectivity information (Princeton synapse) for FlyWire as an additional dataset for use with coconatfly for across dataset connectome analysis.

Usage

register_flywire2(name = "fx", ..., showerror = TRUE)

Arguments

name

The dataset name to use.

...

Additional arguments passed to coconat::register_dataset

showerror

Logical: When set to FALSE will error out silently instead of showing error messages.

Details

The v2 synapses still reference the same v783 segmentation and metadata but

Examples

if (FALSE) { # \dontrun{
library(coconatfly)
# once per session
register_flywire2()

# examples of within dataset analysis
dna02meta <- cf_meta(cf_ids(fx='/type:DNa02', flywire='/type:DNa02'))
dna02.comp=cf_partner_summary(dna02meta, partners = 'out', threshold = 10)
cf_ids(banc='/type:DNa.+')

# an example of across dataset cosine similarity plot
cf_cosine_plot(cf_ids('/type:LAL0(08|09|10|42)',
  datasets = c("flywire", "fx")))
} # }