Package index • coconatfly

Neuron IDs

Functions for specifying and manipulating neuron IDs across datasets

cf_ids() c(<cidlist>): Specify ids for fly connectome datasets
keys() keys2df() keys2list(): Interconvert between keys and ids/datasets

Metadata and connectivity

Fetch neuron metadata and synaptic partner information

cf_meta(): Fetch metadata for neurons from connectome datasets
cf_partners(): Flexible function for fetching partner data across datasets
cf_partner_summary(): Summarise the connectivity of a set of neurons grouping by type
cf_cosine_plot() multi_connection_table(): Multi dataset cosine clustering

Visualisation

Plot and visualise connectivity data

cf_cosine_plot() multi_connection_table(): Multi dataset cosine clustering
triple_cosine_plot(): Cosine cluster across hemibrain and flywire

Datasets and setup

List, abbreviate, and register connectome datasets

cf_datasets(): List connectomics datasets known to coconatfly
abbreviate_datasets(): Abbreviate fly connectomics dataset names
dr_coconatfly(): Status report for coconatfly installation
register_flywire2(): Use FlyWire v2 (Princeton) synapses as an extra dataset with coconatfly